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Export all motif PWMs?

Status: Open.

#44 In aertslab/pycistarget;

· YiweiNiu opened on Jun 12, 2025

Using pycistarget with bulk ATACseq data

Status: Open.

#43 In aertslab/pycistarget;

· gamabunta313 opened on Jan 24, 2025

please update the tutorial

Status: Open.

#40 In aertslab/pycistarget;

· Keep-Raining opened on Nov 8, 2024

Correspond gene ID for each TF name

Status: Open.

#38 In aertslab/pycistarget;

· chrarnold opened on Aug 13, 2024

hg19 cisTarget resource region vs motif rankings are not compatible with pycisTarget

Status: Open.

#37 In aertslab/pycistarget;

· sreichl opened on Jun 14, 2024

CLI argument --fr_overlap_w_ctx_db works but --fraction_overlap_w_cistarget_database is in the docs

Status: Open.

#36 In aertslab/pycistarget;

· sreichl opened on Jun 14, 2024

attr and pytables python modules are required

Status: Open.

#35 In aertslab/pycistarget;

· sreichl opened on Jun 14, 2024

motif_enrichment_homer disappear in version 1.0a2

Status: Open.

#34 In aertslab/pycistarget;

· wangmeijiao opened on May 16, 2024

Running pycistarget error

Status: Open.

#30 In aertslab/pycistarget;

· juliasalas01 opened on Feb 13, 2024

Unable to load annotation for custom

Status: Open.

#29 In aertslab/pycistarget;

· LPerlaza opened on Dec 12, 2023

Couldn't generate menr.pkl file for SCENIC+

Status: Open.

#27 In aertslab/pycistarget;

· Jay2942023 opened on Nov 7, 2023

run_pycistarget

Status: Open.

#24 In aertslab/pycistarget;

· zhangqc723 opened on Aug 18, 2023