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pycisTopic QC bug:: polars.exceptions.ColumnNotFoundError: CB

Status: Open.

#578 In aertslab/scenicplus;

· ShiyuBai-git opened on Jun 4, 2025

Issue running snakemake with cistarget database created by myself and get ValueError: Length mismatch: Expected axis has 0 elements, new values have 3 elements

Status: Open.

#577 In aertslab/scenicplus;

· CZHanoi opened on Jun 3, 2025

The create_nx_tables seems to in-place modify the scplus_obj X_EXP field inside the _get_log2fc_nx function

Status: Open.

#576 In aertslab/scenicplus;

· danielee0707 opened on May 26, 2025

Prepare menr error

Status: Open.

#575 In aertslab/scenicplus;

· olajucha opened on May 23, 2025

generated GRN contains only 20 different Transcription Factors

Status: Open.

#574 In aertslab/scenicplus;

· kunz-jonathan opened on May 21, 2025

data request

Status: Open.

#573 In aertslab/scenicplus;

· tkisss opened on May 18, 2025

scenicplus prepare_data prepare_menr TypeError

Status: Open.

#572 In aertslab/scenicplus;

· petukhovaaa opened on May 14, 2025

how to account for batch effect

Status: Open.

#571 In aertslab/scenicplus;

· orrzor opened on May 5, 2025

Unable to find option to run Snakemake with <code>calculate_TF_eGRN_correlation = False</code>

Status: Open.

#570 In aertslab/scenicplus;

· mairamirza opened on May 1, 2025

scenicplus for bulk multiome data?

Status: Open.

#569 In aertslab/scenicplus;

· malonzm1 opened on Apr 29, 2025

Recent version of polars

Status: Open.

#568 In aertslab/scenicplus;

· pavelToman opened on Apr 28, 2025

pycistopic keeps using polar despite

Status: Open.

#567 In aertslab/scenicplus;

· wdg118 opened on Apr 28, 2025