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FISH-quant

Analysis of smFISH images.

21 followers
France
https://fish-quant.github.io/

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rna2seg rna2seg Public

rna2seg

Python 14 1
ComSeg ComSeg Public

comseg

Python 21 3
big-fish big-fish Public

Toolbox for the analysis of smFISH images.

Python 65 21

Repositories

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Showing 10 of 13 repositories

pipeline_HOX_apiFISH Public

fish-quant/pipeline_HOX_apiFISH’s past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jun 19, 2025
autofish-analysis Public

fish-quant/autofish-analysis’s past year of commit activity

Jupyter Notebook 1 MIT 0 0 0 Updated Jun 6, 2025
rna2seg Public
rna2seg

fish-quant/rna2seg’s past year of commit activity

Python 14 MIT 1 3 0 Updated May 15, 2025
ComSeg Public
comseg

fish-quant/ComSeg’s past year of commit activity

Python 21 MIT 3 5 0 Updated Feb 6, 2025
autofish Public
Python code to control automated iterative FISH system

fish-quant/autofish’s past year of commit activity

Python 5 MIT 0 7 0 Updated Jan 22, 2025
tutorial_gene_selection Public

fish-quant/tutorial_gene_selection’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Feb 28, 2024
big-fish Public
Toolbox for the analysis of smFISH images.

fish-quant/big-fish’s past year of commit activity

Python 65 BSD-3-Clause 21 16 2 Updated Oct 31, 2023
fq-segmentation Public
Wrapper code for segmentation of cells and nuclei with Cellpose.

fish-quant/fq-segmentation’s past year of commit activity

Python 2 BSD-3-Clause 2 2 1 Updated Jul 19, 2023
fq-imjoy Public
ImJoy plugins to run different smFISH analysis in a user-friendly setting.

fish-quant/fq-imjoy’s past year of commit activity

HTML 2 MIT 2 16 0 Updated Mar 8, 2023
sim-fish Public
Toolbox to simulate smFISH images.

fish-quant/sim-fish’s past year of commit activity

Python 8 BSD-3-Clause 1 1 0 Updated Sep 5, 2022

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