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inhpcaitech/FastFold (press backspace or delete to remove)Hi, I have encountered a problem when running the prediction. After finished the MSA, it throws an error that:
Traceback (most recent call last): File /work/software/apps/FastFold/inference.py , line ...
shenwang3333
- Opened 16 days ago
- #196
I use same as instructions but the result when i want to create env is like this
PackagesNotFoundError: The following packages are not available from current channels:
- bioconda::kalign2==2.04
- ...
mrazkiya
- Opened on Aug 28, 2024
- #194
I could not run demo.py Report RuntimeError.
Here is the details, -- Process 0 terminated with the following error: Traceback (most recent call last): File
/home/u2600215/miniconda3/envs/fastfold/lib/python3.8/site-packages/torch/multiprocessing/spawn.py ...
bj600800
- 1
- Opened on Apr 10, 2024
- #192
Hi all,
I am getting error in the installation step. My system is Ubuntu 22.04.3 LTS and my Cuda version is 12.3. Could anyone
please let me know what is the problem could be? Thank you very much!
conda ...
jumpintwo
- Opened on Mar 26, 2024
- #191
Hi ; I am in the process of setting up FastFold for training and encountered a requirement for 2specific cache files:
mmcif_cache.json and chain_data_cache.json. These files appear to be essential for ...
morou34
- 1
- Opened on Mar 4, 2024
- #190
conda env create --name=fastfold -f environment.yml shows lots of conflicts
Package xorg-libx11 conflicts for:
conda-forge::python=3.8 - pypy3.8=7.3.11 - xorg-libx11[version= =1.8.4, 2.0a0| =1.8.6, ...
Emptyset110
- Opened on Feb 15, 2024
- #188
Hi,
I m attempting to run FastFold on a university computer and encountering an issue with the inference.py script. Despite
following the instructions and using the same shell command as provided in the ...
- Opened on Feb 13, 2024
- #187
当我运行python inference.py mypdb.fasta data/pdb_mmcif/mmcif_files/
--use_precomputed_alignments ./alignments
--output_dir ./
--gpus 4
--model_preset multimer
--uniref90_database_path data/uniref90/uniref90.fasta ...
hhh12345678990
- Opened on Jan 27, 2024
- #186
Hi! I m trying to infer a ~5500 aa protein under monomer mode, using a single 40G card. sadly, the process halt with
error of insufficient video memory, even with chunk size set at only 4 or even smaller. ...
Ian-pku
- Opened on Dec 9, 2023
- #185
Hello!
To train FastFold we need mmcif_cache. How can I generate it? In train.py:
parser.add_argument( --template_release_dates_cache_path , type=str, default=None, help= Output of
scripts/generate_mmcif_cache.py ...
vetmax7
- 8
- Opened on Sep 12, 2023
- #183
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