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@jbloomlab

jbloomlab

Jesse Bloom's lab GitHub account

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  1. phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    HTML 15 5

  2. dms_tools2 Public

    software for the analysis and visualization of deep mutational scanning data

    Python 34 21

  3. dmslogo Public

    draw sequence logos tailored to deep mutational scanning (DMS) data

    Jupyter Notebook 12 1

  4. neutcurve Public

    Fit and plot neutralization curves

    Jupyter Notebook 9 3

Repositories

Showing 10 of 138 repositories
  • jbloomlab.github.io Public

    A website for the Bloom lab

    Vue 0 0 0 0 Updated Jun 4, 2025
  • RSV-evolution-neut Public
    Jupyter Notebook 0 0 0 0 Updated Jun 3, 2025
  • cov-229E-spike-phylo Public
    Python 0 0 0 0 Updated May 9, 2025
  • seqneut-pipeline Public

    Pipeline for analyzing sequencing-based neutralization assays

    Jupyter Notebook 1 MIT 0 1 0 Updated May 9, 2025
  • polyclonal Public

    Model mutational escape from polyclonal antibodies.

    Jupyter Notebook 3 0 3 0 Updated Apr 6, 2025
  • binarymap Public

    Binary representations of protein/nucleotide sequences.

    Python 0 1 0 0 Updated Apr 6, 2025
  • alignparse Public

    Align sequences and then parse features.

    Jupyter Notebook 18 10 1 0 Updated Apr 5, 2025
  • flu_seqneut_H3N2_2023-2024 Public

    sequencing-based neutralization assay on H3N2 HA variants from 2023-2024

    Jupyter Notebook 2 0 0 0 Updated Mar 13, 2025
  • flu_H3_2023_seqneut_vs_growth Public

    Growth rates of influenza viruses with HAs in H3 2023-2024 sequencing-based neutralization libraries

    HTML 0 MIT 0 0 0 Updated Mar 12, 2025
  • Ab-CGGnaive_DMS Public

    deep mutational scanning of the CGGnaive antibody

    Jupyter Notebook 1 0 2 1 Updated Feb 3, 2025
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