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kircherlab

Overview
Repositories 25
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People

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Overview
Repositories
Projects
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CADD-scripts Public

CADD scripts release for offline scoring. For more information about CADD, please visit our website

Python 82 35
cfDNA Public

cfDNA analysis workflow

Python 21 6
CADD-SV Public

CADD-SV – a framework to score the effect of structural variants

Python 14 4
hemoMIPs Public

Automated analysis and result reporting for targeted sequencing data

Python 7 3
cfDNA-UniFlow Public template

Workflow for preprocessing cfDNA samples.

Jupyter Notebook 7 1
cfDNA_GCcorrection Public

Python 6 1

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Showing 10 of 25 repositories

BCalm Public

HTML 1 MIT 3 4 0 Updated Jun 12, 2025
MPRAlib Public
Library to analyse, filter and plot MPRA count data.

Python 1 MIT 1 0 0 Updated Jun 12, 2025
CMPRA_figures Public
Notebooks containing figures for the CMPRA project

Jupyter Notebook 0 0 0 0 Updated Jun 10, 2025
ISMB-2025_IGVF-MPRA-Tutorial Public
Main resource repository for the ISMB 2025 Tutorial IP2: Massively parallel reporter assays in functional regulatory genomics and as part of the IGVF data resource

HTML 1 0 0 0 Updated Jun 5, 2025
CADD-scripts Public
CADD scripts release for offline scoring. For more information about CADD, please visit our website

Python 82 35 11 3 Updated May 26, 2025
MPRAsnakeflow_tutorial Public

Jupyter Notebook 0 1 1 0 Updated May 26, 2025
kircherlab.github.io Public
Kircher Lab website

HTML 1 0 0 0 Updated May 19, 2025
MPRAsnakeflow Public
With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

Python 5 MIT 6 11 2 Updated May 13, 2025
MPRAOligoDesign Public
Basic scripts for creating an oligo design file

Python 0 MIT 0 6 0 Updated Mar 25, 2025
CADD-SV Public
CADD-SV – a framework to score the effect of structural variants

Python 14 MIT 4 6 0 Updated Mar 17, 2025

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