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@lilab-bcb

lilab-bcb

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  1. cumulus Public

    Cloud-based scalable and efficient single-cell genomics workflows

    WDL 60 30

  2. pegasus Public

    A tool for analyzing trascriptomes of millions of single cells.

    Python 86 22

  3. pegasusio Public

    pegasus io module for reading/writing single-cell genomics data

    Python 7 4

  4. demuxEM Public

    Demultiplexing cell/nucleus hashing data for single-cell genomics

    Python 2 2

  5. harmony-pytorch Public

    Python 53 9

  6. nmf-torch Public

    Python 10 2

Repositories

Showing 10 of 38 repositories
  • cumulus_feature_barcoding Public
    C++ 2 BSD-3-Clause 1 0 1 Updated Apr 23, 2025
  • pegasus Public

    A tool for analyzing trascriptomes of millions of single cells.

    Python 86 BSD-3-Clause 22 11 1 Updated Apr 22, 2025
  • pegasusio Public

    pegasus io module for reading/writing single-cell genomics data

    Python 7 BSD-3-Clause 4 1 1 Updated Apr 21, 2025
  • stratocumulus Public

    Backend component of Cumulus for different cloud environments.

    Python 2 BSD-3-Clause 0 1 1 Updated Apr 21, 2025
  • UMI-tools Public Forked from CGATOxford/UMI-tools

    Tools for handling Unique Molecular Identifiers in NGS data sets

    Python 0 MIT 198 0 0 Updated Apr 16, 2025
  • harmony-pytorch Public
    Python 53 BSD-3-Clause 9 0 0 Updated Apr 1, 2025
  • cumulus Public

    Cloud-based scalable and efficient single-cell genomics workflows

    WDL 60 BSD-3-Clause 30 9 0 Updated Mar 18, 2025
  • cirrocumulus Public

    Bring your single-cell data to life

    JavaScript 80 BSD-3-Clause 16 12 2 Updated Mar 3, 2025
  • altocumulus Public

    Command line tool for submitting WDL jobs to Terra or Cromwell server.

    Python 7 BSD-3-Clause 0 3 1 Updated Mar 3, 2025
  • backedarray Public

    Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5

    Jupyter Notebook 7 BSD-3-Clause 0 0 1 Updated Mar 3, 2025
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