issues Search Results · repo:scverse/decoupler language:Python
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inscverse/decoupler (press backspace or delete to remove)Report
Hi, I know recently the decoupler has been dramatically updated, but I still use an older version of it (1.9.2). For
stability, robustness, and reproducibility, I currently have no plan to change ...
bug
wgsim
- 3
- Opened 22 hours ago
- #234
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Hi,
I am trying to do a GSEA enrichment analysis on some pseudobulb populations. Several tutorials show usage of the method
decoupler.run_gsea(), however, I cannot find any documentation of this ...
bug
dapluggg
- 3
- Opened yesterday
- #233
Description of feature
Thanks for developing such a nice package.
The download of a large resource in the op module can be a bit time consuming. I wonder if we could make the download
asynchronously ...
enhancement
Mr-Milk
- 3
- Opened 7 days ago
- #231
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Dear all,
I occurred this problems when I import dc. I have tried re-install the decoupler as well but no change.
import decoupler as dc dc.op
AttributeError: module decoupler has no attribute ...
bug
yifanfu01
- 4
- Opened 10 days ago
- #230
Report
SSLEOFError Traceback (most recent call last)
File ~/.conda/envs/decoupler/lib/python3.10/urllib/request.py:1348, in AbstractHTTPHandler.do_open(self, http_class, ...
bug
king2306-s
- 5
- Opened 12 days ago
- #229
The daily CI failed on test for decoupler failed. Please go to the logs of the integration testing repo to review.
@scverse/anndata
scverse-bot
- Opened 12 days ago
- #228
The daily CI failed on test for decoupler failed. Please go to the logs of the integration testing repo to review.
@scverse/anndata
- Opened 12 days ago
- #227
Description of feature
Hi, long time fan first time caller.
I was using the rankby_obsm function, and I ran into issues where my adata object has metadata columns that prevents it
from running correctly. ...
enhancement
jhaberbe
- 3
- Opened 13 days ago
- #225
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When I run gsea (decoupler.mt.gsea) on a ranked list of genes (output of sc.tl.rank_genes_groups) I get the following
error:
2025-06-25 14:07:03 | [INFO] gsea - Running gsea
2025-06-25 14:07:03 ...
bug
elena-uzh
- 1
- Opened 21 days ago
- #221
Report
error when creating pseudobulk from adata, tested subset fewer groups in annotation worked, tested remove counts using X
not working, tested when annotation have over 3 groups this error appears ...
bug
Yiminnn
- 3
- Opened 22 days ago
- #220
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