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MA plots for DE results

enhancementNew feature or requestNew feature or request

Status: Open.

#803 In scverse/pertpy;

· mschilli87 opened on Jun 16, 2025

<code>plot_effects_umap</code> fails after running scCODA, but works after running tascCODA.

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#780 In scverse/pertpy;

· mschilli87 opened on May 22, 2025

Issues with MLP convergence in dl.multilevel_modeling

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#777 In scverse/pertpy;

· Mari123i opened on May 22, 2025

pre-release CI fails

Status: Open.

#774 In scverse/pertpy;

· Zethson opened on May 21, 2025

Inconsistent covariate formatting for credible scCODA effects

Status: Open.

#766 In scverse/pertpy;

· mschilli87 opened on May 12, 2025

buggy defaults for plot_multicomparison_fc

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#755 In scverse/pertpy;

· emdann opened on Apr 30, 2025

gdsc and prism annotation warnings

bugSomething isn't workingSomething isn't working

Status: Open.

#753 In scverse/pertpy;

· Zethson opened on Apr 28, 2025

Milo: annotate adata from mdata

enhancementNew feature or requestNew feature or request

Status: Open.

#751 In scverse/pertpy;

· brainfo opened on Apr 26, 2025

milo mixed effect models

enhancementNew feature or requestNew feature or request

Status: Open.

#747 In scverse/pertpy;

· liezeltamon opened on Apr 17, 2025

Move differential expression analysis to separate package

enhancementNew feature or requestNew feature or request

Status: Open.

#730 In scverse/pertpy;

· grst opened on Mar 19, 2025

<code>pertpy</code> Installation Fails on Google Colab Due to <code>numpy</code> AttributeError

bugSomething isn't workingSomething isn't working

Status: Open.

#724 In scverse/pertpy;

· LCGaoZzz opened on Mar 8, 2025

DIALOGUE v2

enhancementNew feature or requestNew feature or request

Status: Open.

#723 In scverse/pertpy;

· Zethson opened on Mar 6, 2025