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Remove sc.external #2717

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@flying-sheep

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@flying-sheep

External has outlived its usefulness with the emergence of the scverse ecosystem, and should be removed.

^ This text should be expanded

TODO

  • Finalize methods to keep/ merge into main namespace
    • Currently: scanorama, hashsolo, scrublet or equivalent, maybe bbknn
  • Make removal plan (probably deprecation message + maybe email to authors) for
    • harmony
    • dca
    • magic
    • phate
    • palantir
    • trimap
    • sam
    • phenograph
    • wishbone
    • sandbag
    • cyclone
    • Export functionality for
      • spring_project
      • cellbrowser

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Area – APIAPI designArea – ExternalDealing with external toolsMetaA meta-request to be implemented in multiple steps

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