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jupyter-pipeline

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prairie-guy / parallel_zip

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A Python wrapper for GNU parallel that naturally embeds shell code into Python scripts or Jupyter notebooks (no delimiter hell). Features parameter substitution, environment substitution, and cross-product generation to eliminate shell loops. Perfect for integrating Unix programs into Python environments for bioinformatics and data science.

python data-science bioinformatics parallel-computing bioinformatics-pipeline shell-scripting gnu-parallel shell-wrappers parallel-computing-toolbox jupyter-pipeline data-science-pipeline bioinformatics-pipelines shell-integration subprocess-alternative jupyter-shell notebook-integration embed-shell-commands shell-from-python jupyter-bash
  • Updated Jun 28, 2025
  • Python

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