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(feat): presets #3653

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(feat): presets #3653

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@flying-sheep flying-sheep commented May 28, 2025

  • Release notes not necessary because:

Self-documenting presets work!

E.g.:

TODO

  • actually add everything to SeuratV5 flavor

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codecov bot commented May 28, 2025

Codecov Report

Attention: Patch coverage is 97.72727% with 3 lines in your changes missing coverage. Please review.

Project coverage is 76.20%. Comparing base (62d3f81) to head (80c24a9).

✅ All tests successful. No failed tests found.

Files with missing lines Patch % Lines
src/scanpy/tools/_leiden.py 86.36% 3 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3653      +/-   ##
==========================================
+ Coverage   76.02%   76.20%   +0.17%     
==========================================
  Files         117      117              
  Lines       12543    12635      +92     
==========================================
+ Hits         9536     9628      +92     
  Misses       3007     3007              
Files with missing lines Coverage Δ
src/scanpy/__init__.py 96.00% <100.00%> (ø)
src/scanpy/_settings/__init__.py 86.08% <100.00%> (+0.47%) ⬆️
src/scanpy/_settings/presets.py 100.00% <100.00%> (ø)
...preprocessing/_deprecated/highly_variable_genes.py 86.36% <ø> (ø)
src/scanpy/preprocessing/_highly_variable_genes.py 93.77% <100.00%> (+0.07%) ⬆️
src/scanpy/preprocessing/_pca/__init__.py 88.55% <100.00%> (+0.11%) ⬆️
src/scanpy/preprocessing/_recipes.py 91.37% <100.00%> (+0.15%) ⬆️
src/scanpy/preprocessing/_simple.py 90.69% <100.00%> (ø)
src/scanpy/tools/_rank_genes_groups.py 92.77% <100.00%> (+0.06%) ⬆️
src/scanpy/tools/_umap.py 69.35% <ø> (ø)
... and 1 more

@flying-sheep flying-sheep added this to the 1.12.0 milestone Jun 3, 2025
@flying-sheep flying-sheep changed the base branch from main to pa/settings-overhaul June 6, 2025 10:07
Base automatically changed from pa/settings-overhaul to main June 10, 2025 12:23
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Add Seurat compatibility preset
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