CellProfiler pipeline and ImageJ workflow developed for segmentation of H2B_FUCCI2a_MCF7 cell nuclei for per-nucleus and background fluorescence intensity measurement. Example workflows for downstream cell cycle analysis are also provided in this repository.
OrganelleProfiler and OrganelleContentProfiler pipelines for CellProfiler as described in Laan et al (PLoS ONE, 2023)
Measure distances between two types of markers during FISH Assay after Chromosomal Translocation event
ImageJ macros for preparation of single images from stacks with maximum intensity projections and partially automated selection of slices in focus. CellProfiler Pipeline for yH2AX and 53BP1 counting and mitotic cells segmentation in asynchronous cultures. R scripts for processing of CellProfiler output.
Test of Uniformity for centrosome orientation at early timepoints during Wound Healing Assay
Scripts and figures as a part of an ongoing research initiative for Advancing Hepatocellular Carcinoma Staging and Prognosis
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