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segmentation-automation

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Fine-tune-the-Segment-Anything-Model-SAM-

A. Moghimi, M. Welzel, T. Celik, and T. Schlurmann, "A Comparative Performance Analysis of Popular Deep Learning Models and Segment Anything Model (SAM) for River Water Segmentation in Close-Range Remote Sensing Imagery,"

  • Updated Dec 30, 2024
  • Jupyter Notebook

Streamline fluorescent microscopy workflows with these scripts. This collection provides automated cell segmentation & tracking using TrackMate, featuring two-step segmentation, flexible temporal/spatial tracking, and efficient analysis of large datasets. Ideal for researchers automating imaging analysis.

  • Updated Jun 19, 2025
  • ImageJ Macro

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