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  1. CodonBERT CodonBERT Public

    Repository for mRNA Paper and CodonBERT publication.

    Python 131 23

  2. enact-pipeline enact-pipeline Public

    Repository for ENACT pipeline for end-to-end analysis of Visium HD data

    Python 55 16

  3. spatialone-pipeline spatialone-pipeline Public

    Spatial One

    Python 28 4

  4. risk.assessr risk.assessr Public

    Define quality variables for evaluating the risk associated with R packages.

    R 28 2

  5. LMR-SurfaceID LMR-SurfaceID Public

    Repo contains source code of the SurfaceID paper

    Python 23 4

  6. RiboNN RiboNN Public

    RiboNN: predicting translation efficiencies from mRNA sequences

    Python 16 5

Repositories

Showing 10 of 43 repositories
  • CImpact Public

    Causal inference library for timeseries analysis

    Python 15 1 3 1 Updated Jul 23, 2025
  • MIPHEI-ViT Public

    MIPHEI-ViT: Repository to train Image-to-Image H&E to Immunofluorescence models

    Jupyter Notebook 14 3 1 0 Updated Jul 17, 2025
  • SNAC-DB Public

    Repository containing pipelines developed for the SNAC-DB (Structural NANOBODY® VHH and Antibody Complex Database). SNAC-DB is ML-ready curation of the Protein Data Bank (PDB) for NANOBODY® VHH and antibody complex structures.

    Python 1 0 0 0 Updated Jul 16, 2025
  • RiboNN Public

    RiboNN: predicting translation efficiencies from mRNA sequences

    Python 16 5 0 0 Updated Jul 8, 2025
  • RetroDMTA Public

    Code for the paper "Back to the Future of Lead Optimization: Benchmarking Compound Prioritization Strategies"

    Python 0 0 0 0 Updated Jul 4, 2025
  • Clinical-BERT-Training Public
    Python 1 0 0 0 Updated Jul 3, 2025
  • causal_survival_analysis Public

    Causal survival analysis

    R 1 GPL-3.0 0 0 0 Updated Jun 26, 2025
  • enact-pipeline Public

    Repository for ENACT pipeline for end-to-end analysis of Visium HD data

    Python 55 16 6 1 Updated Jun 13, 2025
  • teal.builder.checks Public
    R 2 GPL-2.0 0 0 0 Updated Jun 3, 2025
  • sharp-bounds-for-continuous-treatment-effects Public

    Snapshot of the implementation used to generate figures and numerical results from the paper "Sharp Bounds for Continuous-Valued Treatment Effects with Unobserved Confounders", Baitairian et al. (2024).

    R 0 0 0 0 Updated May 28, 2025
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