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@AllenCellModeling

Allen Institute for Cell Science - Modeling

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  1. pytorch_fnet Public

    Three dimensional cross-modal image inference

    Python 154 63

  2. pytorch_integrated_cell Public

    Integrated Cell project implemented in pytorch

    Python 44 13

  3. aicsimageio Public

    Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

    Python 211 50

  4. aicspylibczi Public

    Forked from elhuhdron/pylibczi

    Python module utilizing libCZI for reading Zeiss CZI files.

    C++ 37 8

  5. cookiecutter-pypackage Public

    A cookiecutter template to generate a new Python package.

    Python 23 7

Repositories

Showing 10 of 76 repositories
  • cyto-dl Public
    Python 17 6 8 6 Updated Mar 26, 2025
  • fov_processing_pipeline Public
    Python 0 0 8 1 Updated Mar 26, 2025
  • aicsimageio Public

    Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

    Python 211 50 3 5 Updated Jan 15, 2025
  • aicspylibczi Public Forked from elhuhdron/pylibczi

    Python module utilizing libCZI for reading Zeiss CZI files.

    C++ 37 GPL-3.0 9 15 0 Updated Jan 7, 2025
  • czi-to-ome-xslt Public

    A repository of XSL transform sheets to map CZI metadata to OME.

    XSLT 2 0 6 0 Updated Dec 13, 2024
  • fish_morphology_code Public

    Basic code and automated workflows to produce analysis friendly data from annotated FISH images

    Python 4 2 5 4 Updated Nov 4, 2024
  • napari-aicsimageio Public

    Multiple file format reading directly into napari using pure Python

    Python 35 GPL-3.0 10 16 (3 issues need help) 3 Updated Jul 21, 2024
  • pointcloudutils Public
    Python 0 0 0 0 Updated Apr 17, 2024
  • nvidia-docker-stats Public

    Monitor nvidia gpu unit load associated with docker spawned processes

    Python 29 GPL-3.0 13 1 2 Updated Oct 1, 2023
  • aics_dask_utils Public

    Utility functions commonly used by AICS projects for interacting with Dask

    Python 1 0 2 0 Updated Aug 10, 2023
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