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Kingsford-Group

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  1. scallop scallop Public

    Scallop is a reference-based transcriptome assembler for RNA-seq

    C++ 90 16

  2. bloomtree bloomtree Public

    C++ 73 14

  3. squid squid Public

    SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

    C++ 42 23

  4. variantstore variantstore Public

    VariantStore: A Large-Scale Genomic Variant Search Index

    C++ 39 5

  5. kourami kourami Public

    Kourami: Graph-guided assembly for HLA alleles

    Java 38 12

  6. omhismb2019 omhismb2019 Public

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Showing 10 of 77 repositories
  • autotunex Public
    Python 1 0 0 0 Updated Jan 18, 2025
  • mdsscope Public

    Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph

    C++ 9 BSD-3-Clause 0 0 0 Updated Oct 1, 2024
  • glitter Public
    Go 0 0 0 0 Updated Jun 8, 2024
  • mrngb Public
    Python 0 0 0 0 Updated Mar 11, 2024
  • graphhic Public
    Python 4 BSD-3-Clause 1 0 0 Updated Feb 18, 2024
  • autoparadvisor Public
    Python 0 BSD-3-Clause 3 0 0 Updated Feb 12, 2024
  • vsbo Public
    Python 5 BSD-3-Clause 1 0 1 Updated Feb 12, 2024
  • omhismb2019 Public
    C++ 23 8 3 0 Updated Dec 4, 2023
  • maskedminimizer Public
    Python 0 BSD-3-Clause 0 0 0 Updated Jun 27, 2023
  • maskminimizer Public
    Python 0 0 0 0 Updated Jun 27, 2023
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