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Applied Bioinformatics Laboratories

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  1. hic-bench hic-bench Public

    A set of pipelines for Hi-C and ChIP-Seq analysis.

    HTML 46 20

  2. lncRNA-screen lncRNA-screen Public

    lncRNA-screen

    Shell 26 16

  3. RNA-Seq_Standard RNA-Seq_Standard Public

    Python 11 12

  4. UCSC-custom-track-generator UCSC-custom-track-generator Public

    Forked from stevekm/UCSC-custom-track-generator

    Script to automatically generate custom tracks to load on UCSC

    Python 2

  5. TCGA_downloads TCGA_downloads Public

    How to download TCGA data from GDC portal

    R 2 1

  6. hic-bench_documentation hic-bench_documentation Public

    User manuals for the HiC-Bench software

    TeX 1 4

Repositories

Showing 10 of 28 repositories
  • pipeline-atac2hic Public

    Pipeline to predict HiC matrices from ATAC-seq fastq files using maxATAC and C.Origami

    Python 0 MIT 0 0 0 Updated Jan 13, 2025
  • hic-bench Public

    A set of pipelines for Hi-C and ChIP-Seq analysis.

    HTML 46 20 10 0 Updated Apr 11, 2024
  • sns Public Forked from igordot/sns

    illumina sequencing data analysis pipelines

    Shell 1 MIT 28 0 0 Updated Sep 23, 2022
  • neoantigen-pipeline Public

    Call somatic mutations and call Class 1 and 2 epitopes

    Python 0 0 0 0 Updated Jun 2, 2021
  • TCGA_downloads Public

    How to download TCGA data from GDC portal

    R 2 1 0 1 Updated May 3, 2021
  • Gene_fusion Public
    0 0 0 0 Updated Mar 30, 2021
  • computational-tools Public
    0 0 0 0 Updated Apr 13, 2020
  • deep-drug-response Public Forked from TeoSakel/deep-drug-response
    R 1 GPL-3.0 10 0 0 Updated Apr 18, 2019
  • containers Public Forked from NYU-Molecular-Pathology/containers

    Docker and Singularity containers for Bioinformatics programs

    Dockerfile 0 GPL-3.0 2 0 0 Updated Oct 18, 2018
  • nf-bio-basic Public Forked from stevekm/nf-bio-basic

    Nextflow basic Bioinformatics workflow for testing and demonstration

    Makefile 1 18 0 0 Updated Sep 6, 2018
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