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@PDB-REDO

PDB-REDO

Tools for macromolecular structure optimisation and analysis

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  1. dssp Public

    Application to assign secondary structure to proteins

    C++ 189 21

  2. alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…

    C++ 96 19

  3. libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    C++ 33 14

  4. density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    C++ 5

  5. tortoize Public

    Application to calculate ramachandran z-scores

    C++

  6. platonyzer Public

    CMake

Repositories

Showing 10 of 17 repositories
  • libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    C++ 33 BSD-2-Clause 14 0 1 Updated Apr 2, 2025
  • dssp Public

    Application to assign secondary structure to proteins

    C++ 189 BSD-2-Clause 21 2 0 Updated Apr 2, 2025
  • tortoize Public

    Application to calculate ramachandran z-scores

    C++ 0 BSD-2-Clause 0 0 0 Updated Apr 2, 2025
  • libpdb-redo Public

    Library containing shared code for various PDB-REDO programs

    C++ 0 BSD-2-Clause 0 1 0 Updated Apr 2, 2025
  • density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    C++ 5 BSD-2-Clause 0 0 0 Updated Apr 2, 2025
  • AlphaBridge Public
    Python 32 6 3 0 Updated Mar 10, 2025
  • dssp-server Public

    Web server implementation for DSSP

    C++ 1 0 0 0 Updated Feb 26, 2025
  • cif-tools Public

    A suite of programs to manipulate and examine mmCIF files

    C++ 3 BSD-2-Clause 0 1 0 Updated Feb 17, 2025
  • pdb-redo-session-manager Public

    A session manager for PDB-REDO

    C++ 0 BSD-2-Clause 0 0 0 Updated Feb 12, 2025
  • alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.

    C++ 96 BSD-2-Clause 19 2 0 Updated Feb 4, 2025

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