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@RNA-FRETools

RNA-FRETools

Software tools for analyzing spectroscopic data, especially FRET, in the realm of structure, dynamics and function of ncRNAs
README.md

We are combining single-molecule FRET spectroscopy 🔬 with computational modeling 💻 to elucidate how RNA structure and dynamics conveys function.

Visit us at ➡️ rna-fretools.github.io/

Core developers

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  1. MASH-FRET Public

    MATLAB package to analyze single-molecule FRET data

    MATLAB 8 2

  2. fretraj Public

    PyMOL plugin to calculate accessible contact volumes on PDB structures

    Python 9 2

  3. Lifefit Public

    Analyze fluorescence lifetime and anisotropy decays.

    Python 8 3

  4. fretlabel Public

    Nucleic acid fluorescence labeling for all-atom MD simulations

    Python 5 1

Repositories

Showing 10 of 12 repositories
  • MASH-FRET Public

    MATLAB package to analyze single-molecule FRET data

    MATLAB 8 GPL-3.0 2 5 (1 issue needs help) 0 Updated Mar 21, 2025
  • fretraj Public

    PyMOL plugin to calculate accessible contact volumes on PDB structures

    Python 9 GPL-3.0 2 0 0 Updated Mar 17, 2025
  • fretlabel Public

    Nucleic acid fluorescence labeling for all-atom MD simulations

    Python 5 GPL-3.0 1 0 0 Updated Mar 16, 2025
  • Lifefit Public

    Analyze fluorescence lifetime and anisotropy decays.

    Python 8 MIT 3 0 0 Updated Feb 22, 2025
  • PAMtools Public

    Helper functions for the PAM software

    Python 0 MIT 0 0 0 Updated Jan 3, 2025
  • hplc2spect Public

    Analysis of 2D HPLC chromatograms

    MATLAB 0 MIT 1 0 0 Updated Jan 2, 2025
  • just-the-docs Public Forked from just-the-docs/just-the-docs

    A modern, high customizable, responsive Jekyll theme for documention with built-in search.

    CSS 0 MIT 3,786 0 1 Updated Aug 20, 2024
  • Steffen-Bioinformatics-2021 Public

    Analysis of DNA hairpin dynamics with FRETraj

    2 GPL-3.0 0 2 0 Updated Jul 14, 2024
  • rna-fretools.github.io Public

    Single-moecule imaging and computation with RNA

    1 1 0 0 Updated Jul 13, 2024
  • Steffen_NucleicAcidsResearch_2024 Public

    De novo models of a manganese riboswitch using Rosetta's FARFAR2

    Python 0 MIT 0 0 0 Updated Jul 13, 2024
View all repositories

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