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Su Lab

Code repos for the Su Lab at The Scripps Research Institute

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  1. WikidataIntegrator WikidataIntegrator Public

    A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

    Python 254 47

  2. DrugMechDB DrugMechDB Public

    A database of paths that represent the mechanism of action from a drug to a disease in an indication.

    Jupyter Notebook 59 18

  3. Applied-Bioinformatics Applied-Bioinformatics Public

    Student course material for the Applied Bioinformatics course at Scripps Research

    Jupyter Notebook 38 32

  4. YPet YPet Public

    Javascript library to rapidly annotate paragraphs of text on websites with the goal of making the annotation process as fast and simple as possible.

    JavaScript 31 3

  5. mark2cure mark2cure Public

    Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.

    Python 14 8

  6. sparql_to_pandas sparql_to_pandas Public

    Example for accessing SPARQL endpoints in Python with Pandas

    Jupyter Notebook 13 9

Repositories

Showing 10 of 102 repositories
  • DBR-X Public

    DBR-X: Drug-Based Reasoning Explainer

    0 0 0 0 Updated Mar 26, 2025
  • sulab.org Public
    HTML 0 BSD-3-Clause 7 0 1 Updated Mar 25, 2025
  • R 0 Apache-2.0 0 0 0 Updated Mar 4, 2025
  • TSRI-CBB Public

    This is the Github repository for The Scripps Research Institute Computational Biology and Bioinformatics (CBB) community and affiliated core track for graduate students.

    HTML 4 0 1 (1 issue needs help) 0 Updated Jan 20, 2025
  • Jupyter Notebook 1 MIT 269 0 0 Updated Aug 9, 2024
  • CBRonMRN Public
    Python 0 0 0 0 Updated Feb 21, 2024
  • WikidataIntegrator Public

    A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

    Python 254 MIT 47 10 0 Updated Nov 14, 2023
  • DrugMechDB Public

    A database of paths that represent the mechanism of action from a drug to a disease in an indication.

    Jupyter Notebook 59 CC0-1.0 18 7 (1 issue needs help) 2 Updated Sep 24, 2023
  • DMDB_Analysis Public
    Jupyter Notebook 0 3 0 2 Updated Apr 20, 2023
  • DrugMechDB-1 Public Forked from SuLab/DrugMechDB

    A database of paths that represent the mechanism of action from a drug to a disease in an indication.

    Jupyter Notebook 0 MIT 18 0 0 Updated Apr 13, 2023

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