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Boni Lab

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  1. seroepi-02FL-influenza-vietnam-PCA Public

    Analysis and data for paper on principal components analysis on human antibody profiles to influenza virus

    MATLAB

  2. malariaibm-MDA-2018WHOERG Public

    repository with code, output, and figures for manuscript on antimalarial drug-resistance evolution during mass drug administration (MDA). This work was commissioned for a WHO Evidence Review Group …

    C++

  3. malariaibm-generation-of-MDR-mutants Public

    Repo for malaria individual-based simulation study of which treatment strategies present more risk in generating multi-drug-resistant mutants earlier

    Jupyter Notebook

  4. malariaibm-MMC-WP2-partnerdrugresistance Public

    C++

  5. tropicalflu-03FL-10years-communityILI-HCMC Public

    R

  6. malariaibm-spatial-Rwanda-561H Public archive

    Complete source code and intermediary files to accompany the manuscript published in Nature Medicine.

    C++

Repositories

Showing 10 of 24 repositories
  • malasim Public
    C++ 0 MIT 1 0 1 Updated Mar 27, 2025
  • Temple-Malaria-Simulation Public Forked from rjzupkoii/PSU-CIDD-Malaria-Simulation

    Spatial individual-based model of malaria with a focus on drug resistance evolution.

    C++ 2 4 4 0 Updated Mar 27, 2025
  • Uganda-phase-1 Public Forked from rjzupkoii/PSU-CIDD-Uganda
    C++ 0 2 0 0 Updated Dec 17, 2024
  • PSU-CIDD-MaSim-Support Public

    Various internal scripts used in conjunction with the malaria simulation across projects.

    Python 3 BSD-3-Clause 4 1 0 Updated Feb 6, 2024
  • Temple-Kenya Public

    Source files used to study malaria in Kenya using spatial individual-based modeling.

    0 0 0 0 Updated Feb 4, 2024
  • malariaibm-spatial-BurkinaFaso-2022 Public

    Complete source code and intermediary files to accompany the manuscript.

    C++ 0 0 0 0 Updated Jan 30, 2024
  • malariaibm-generation-of-MDR-mutants Public

    Repo for malaria individual-based simulation study of which treatment strategies present more risk in generating multi-drug-resistant mutants earlier

    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 7, 2024
  • malariaibm-spatial-Rwanda-561H Public archive

    Complete source code and intermediary files to accompany the manuscript published in Nature Medicine.

    C++ 0 0 0 0 Updated Dec 15, 2023
  • malariaibm-MDA-2018WHOERG Public

    repository with code, output, and figures for manuscript on antimalarial drug-resistance evolution during mass drug administration (MDA). This work was commissioned for a WHO Evidence Review Group (ERG) in September 2018.

    C++ 0 MIT 0 0 0 Updated Nov 27, 2023
  • tropicalflu-03FL-10years-communityILI-HCMC Public
    R 0 0 0 0 Updated Oct 3, 2023
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