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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 135 47

Repositories

Showing 10 of 107 repositories
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    Python 0 MIT 0 6 3 Updated Mar 29, 2025
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    Python 1 MIT 0 22 2 Updated Mar 28, 2025
  • FiTree Public

    FiTree: Bayesian inference of fitness landscapes via tree-structured branching processes

    Jupyter Notebook 3 MIT 0 0 0 Updated Mar 28, 2025
  • CTC-SCITE Public

    Computational method and analyses to study the clonality of circulating tumor cell clusters

    C++ 2 GPL-3.0 1 3 0 Updated Mar 28, 2025
  • LolliPop Public

    Deconvolution for Wastewater Genomics

    Jupyter Notebook 3 GPL-3.0 1 2 1 Updated Mar 28, 2025
  • smallgenomeutilities Public

    smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

    Python 11 GPL-2.0 8 7 2 Updated Mar 28, 2025
  • Jnotype Public

    Probabilistic modeling of high-dimensional binary data in JAX

    Python 3 0 6 1 Updated Mar 26, 2025
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    Shell 7 3 2 0 Updated Mar 25, 2025
  • pMHN Public

    Personalised mutual hazard networks: fixed effects in cancer progression modeling

    Python 3 MIT 0 1 0 Updated Mar 22, 2025
  • mnem Public

    Mixture Nested Effects Models - https://doi.org/10.1093/bioinformatics/bty602 - https://bioconductor.org/packages/mnem

    R 4 3 0 0 Updated Mar 22, 2025
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