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  1. cgroza/GraffiTE Public

    GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

    R 175 9

  2. TE-Aid Public

    Annotation helper tool for the manual curation of transposable element consensus sequences

    R 47 8

  3. dnaPipeTE Public

    dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is…

    Dockerfile 54 11

  4. dnaPT_utils Public

    A collection of scripts to perform several downstream analyses with dnaPipeTE 1.3

    Shell 6 1

  5. TypeTE Public

    Genotyping of segregating mobile elements insertions

    Perl 19 1

  6. typeref Public

    Bi-allelic genotyping of reference transposable elements

    Python 1