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Data Science in Systems Biology

The research group Data Science in Systems Biology at the School of Life Sciences, Technical University of Munich

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  1. data-leakage-ppi-prediction data-leakage-ppi-prediction Public

    Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'

    C++ 23 1

  2. OpenLabFramework OpenLabFramework Public archive

    A open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth

    JavaScript 21 6

  3. NEASE NEASE Public

    A network-based approach for exon set enrichment

    Python 14 2

  4. TF-Prioritizer TF-Prioritizer Public

    Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

    Java 13

  5. drevalpy drevalpy Public

    DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.

    Python 12 1

  6. SPONGE SPONGE Public

    Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference

    R 11 9

Repositories

Showing 10 of 92 repositories
  • drevalpy Public

    DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.

    Python 12 GPL-3.0 1 18 1 Updated Apr 17, 2025
  • namco Public
    R 10 GPL-3.0 3 25 0 Updated Apr 17, 2025
  • Python 0 GPL-3.0 0 0 6 Updated Apr 17, 2025
  • TypeScript 0 0 0 0 Updated Apr 16, 2025
  • preprocess_drp_data Public

    This project contains all steps necessary to get from the original data repositories of CCLE/GDSC/… to usable input files.

    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Apr 14, 2025
  • DIGGER Public

    Exploring Isoform-specific interactions

    Python 10 GPL-3.0 3 3 2 Updated Apr 8, 2025
  • NEASE Public

    A network-based approach for exon set enrichment

    Python 14 GPL-3.0 2 0 0 Updated Mar 28, 2025
  • Python 6 MIT 1 1 0 Updated Mar 21, 2025
  • PRONE.Shiny Public

    Code of the R Shiny App of the PRONE R Package.

    R 1 GPL-3.0 0 3 0 Updated Mar 21, 2025
  • PRONE Public

    R Package for preprocessing, normalizing, and analyzing proteomics data

    R 2 GPL-3.0 1 0 0 Updated Mar 21, 2025

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