Skip to content
@ngs-fzb

ngs-fzb

Popular repositories Loading

  1. MTBseq_source MTBseq_source Public

    MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis c…

    Perl 44 23

  2. HaemoSeq HaemoSeq Public

    A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.

    Shell 5 1

  3. NTMtools NTMtools Public

    This repository contains scripts and manuals for whole genome sequencing based analysis of Non-tuberculous mycobacteria. Questions? Ask mdiricks@fz-borstel.de

    Shell 2 1

  4. binoSNP binoSNP Public

    🔍 💊 Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains

    Perl 1 1

  5. SMaltophilia_phylo SMaltophilia_phylo Public

    Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper

    R 1 1

  6. SARSCOV2seq SARSCOV2seq Public

    Pipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data

    Perl

Repositories

Showing 6 of 6 repositories
  • NTMtools Public

    This repository contains scripts and manuals for whole genome sequencing based analysis of Non-tuberculous mycobacteria. Questions? Ask mdiricks@fz-borstel.de

    Shell 2 1 0 0 Updated Feb 19, 2025
  • MTBseq_source Public

    MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

    Perl 44 23 7 0 Updated Aug 9, 2024
  • HaemoSeq Public

    A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.

    Shell 5 1 0 0 Updated May 21, 2024
  • SARSCOV2seq Public

    Pipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data

    Perl 0 GPL-3.0 0 0 0 Updated Dec 8, 2023
  • binoSNP Public

    🔍 💊 Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains

    Perl 1 GPL-3.0 1 1 0 Updated Feb 12, 2020
  • SMaltophilia_phylo Public

    Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper

    R 1 1 1 0 Updated Dec 18, 2019

Top languages

Loading…

Most used topics

Loading…