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@refgenie

Refgenie

Standardized assets for reference genomes

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  1. refgenie Public

    Reference genome resource manager

    Python 75 10

  2. refgenieserver Public

    Serves a web interface and RESTful API for reference genome assets.

    Python 12 3

  3. refgenconf Public

    A Python object for standardized reference genome assets.

    Python 2 6

  4. refgenie_nfcore Public

    Nextflow plugin for refgenie compatibility

    Python 8

  5. deploy_guide Public

    Information on deployed refgenieserver instances.

    1

  6. refgenomes.databio.org Public

    Primary refgenieserver instance

    Python 1

Repositories

Showing 10 of 19 repositories
  • refget Public

    Python tools for identification and distribution of reference sequences and sequence collections

    Python 5 BSD-2-Clause 1 3 0 Updated Mar 22, 2025
  • refgenie-docs Public

    Documentation for refgenie components

    Python 0 0 1 0 Updated Mar 19, 2025
  • refgenomes.databio.org Public

    Primary refgenieserver instance

    Python 1 0 4 0 Updated Mar 18, 2025
  • refgenconf Public

    A Python object for standardized reference genome assets.

    Python 2 BSD-2-Clause 6 12 2 Updated Mar 15, 2025
  • recipes Public

    recipes & asset classes definitions

    0 GPL-3.0 1 1 1 Updated Mar 15, 2025
  • seqcolapi Public
    Python 0 BSD-2-Clause 2 0 0 Updated Jul 6, 2024
  • seqcol Public archive

    Implementation of sequence collections

    Jupyter Notebook 1 BSD-2-Clause 0 0 0 Updated Feb 14, 2024
  • refgenie Public

    Reference genome resource manager

    Python 75 BSD-2-Clause 10 52 1 Updated Dec 5, 2023
  • refgenie_looper_demo Public

    Demo of how to use the refgenie plugin with looper

    Python 0 0 0 0 Updated Jul 10, 2022
  • aws_igenomes Public

    configuration for an iGenomes refgenieserver

    Python 1 1 0 1 Updated May 3, 2022
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