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@som-shahlab

som-shahlab

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  1. medalign Public

    MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

    92 9

  2. ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 159 14

  3. femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 131 21

  4. trove Public

    Weakly supervised medical named entity classification

    Python 72 21

  5. meds_reader Public

    C++ 17

Repositories

Showing 10 of 51 repositories
  • med-s1 Public Forked from simplescaling/s1

    s1: Simple test-time scaling

    Jupyter Notebook 0 Apache-2.0 703 0 0 Updated Mar 20, 2025
  • femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 131 Apache-2.0 21 4 2 Updated Mar 19, 2025
  • aplusml Public

    APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models

    Jupyter Notebook 21 Apache-2.0 4 4 0 Updated Mar 19, 2025
  • ehrshot-website Public

    Public website for EHRSHOT

    SCSS 1 MIT 1 0 0 Updated Mar 18, 2025
  • hf_ehr Public

    Taking off-the-shelf HuggingFace models and training them on EHR data

    Jupyter Notebook 15 Apache-2.0 5 1 0 Updated Mar 10, 2025
  • clinical_trial_patient_matching Public

    Zero-shot clinical trial matching with LLMs

    Python 10 3 0 0 Updated Mar 1, 2025
  • motor_tutorial Public

    Tutorial repository for the official MOTOR release

    Jupyter Notebook 9 Apache-2.0 0 0 0 Updated Feb 22, 2025
  • clinical_trial_patient_matching-website Public

    Public facing website for zero-shot CT patient matching paper

    JavaScript 4 0 0 0 Updated Feb 19, 2025
  • ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 159 Apache-2.0 14 4 0 Updated Feb 17, 2025
  • medalign-website Public

    Landing page and website for the MedAlign project

    HTML 0 MIT 2 0 2 Updated Feb 16, 2025
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