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@metaspace2020

METASPACE

Scientific project on metabolite annotation of big data from imaging mass spectrometry

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  1. metaspace Public

    Cloud engine and platform for metabolite annotation for imaging mass spectrometry

    TypeScript 49 11

Repositories

Showing 10 of 21 repositories
  • metaspace Public

    Cloud engine and platform for metabolite annotation for imaging mass spectrometry

    TypeScript 49 Apache-2.0 11 91 6 Updated Mar 29, 2025
  • metaspace-converter Public

    Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData

    Python 11 Apache-2.0 1 3 0 Updated Mar 16, 2024
  • Lithops-METASPACE Public

    Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline

    Jupyter Notebook 12 4 3 2 Updated Jul 6, 2023
  • offsample Public

    Project to develop methods to recognize off-sample mass spectrometry images

    Jupyter Notebook 6 0 0 0 Updated Oct 8, 2020
  • coloc Public

    Methods for measuring co-localization of ion images

    Vue 8 Apache-2.0 3 2 0 Updated Oct 7, 2020
  • pixel-annot-export Public archive

    Metaspace pixel annotation export snapshots

    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 14, 2019
  • sm-engine Public archive

    Engine for metabolite annotation for imaging mass spectrometry

    Python 7 Apache-2.0 5 0 0 Updated Jul 30, 2018
  • sm-engine-ansible Public archive

    Setting up cloud infrastructure for the engine using Ansible

    Python 2 Apache-2.0 6 0 1 Updated Jun 29, 2018
  • sm-molecular-db Public archive

    Unified REST API for molecular database data

    Python 0 Apache-2.0 0 0 0 Updated Jun 28, 2018
  • metadata Public archive

    Metadata for imaging mass spectrometry

    1 Apache-2.0 2 0 0 Updated Jun 28, 2018
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