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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 407 45

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 248 36

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 146 26

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 144 48

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 89 29

Repositories

Showing 10 of 183 repositories
  • tile-transcoder Public

    Transfer and convert the file format of image tiles.

    Python 2 BSD-3-Clause 0 0 0 Updated Mar 28, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 144 BSD-3-Clause 48 82 6 Updated Mar 28, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    TypeScript 23 Apache-2.0 327 91 37 Updated Mar 28, 2025
  • ng-extend Public
    Vue 5 8 3 26 Updated Mar 28, 2025
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    Python 7 MIT 6 1 0 Updated Mar 27, 2025
  • network-speed Public

    Application for testing network speed in a variety of configurations.

    Python 0 BSD-3-Clause 0 0 0 Updated Mar 26, 2025
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    Python 41 BSD-3-Clause 8 14 0 Updated Mar 26, 2025
  • ngl_bench Public

    Manipulating neuroglancer and unraveling connectomes is an agentic problem.

    0 0 0 0 Updated Mar 26, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    Python 47 GPL-3.0 19 23 5 Updated Mar 25, 2025
  • Python 0 GPL-3.0 1 0 0 Updated Mar 20, 2025

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