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<h1 class="title toc-ignore">Prj01_RL_pheno_qtl2_DO_11092020_69k</h1>
<h4 class="author">Hao He</h4>
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<strong>Last updated:</strong> 2022-09-16
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<p>
<strong>Checks:</strong> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> 6 <span class="glyphicon glyphicon-exclamation-sign text-danger" aria-hidden="true"></span> 1
</p>
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<strong>Knit directory:</strong> <code>csna_workflow/</code> <span class="glyphicon glyphicon-question-sign" aria-hidden="true" title="This is the local directory in which the code in this file was executed."> </span>
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This reproducible <a href="http://rmarkdown.rstudio.com">R Markdown</a> analysis was created with <a
href="https://github.com/jdblischak/workflowr">workflowr</a> (version 1.6.2). The <em>Checks</em> tab describes the reproducibility checks that were applied when the results were created. The <em>Past versions</em> tab lists the development history.
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<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRMarkdownfilestronguptodate"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>R Markdown file:</strong> up-to-date </a>
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<p>Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.</p>
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<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongSeedstrongcodesetseed20190922code"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>Seed:</strong> <code>set.seed(20190922)</code> </a>
</p>
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<div class="panel-body">
<p>The command <code>set.seed(20190922)</code> was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.</p>
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<p>Great job! Recording the operating system, R version, and package versions is critical for reproducibility.</p>
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2022-08-29
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Build site.
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Rmd
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<a href="https://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@github.com/TheJacksonLaboratory/CSNA/blob/8541f24e3439709e29ad28072f9e2d85a82452b0/analysis/Prj01_RL_pheno_qtl2_DO_11092020_69k.Rmd" target="_blank">8541f24</a>
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xhyuo
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2022-08-29
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Prj01_RL_pheno_qtl2_DO_11092020_69k