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<title>Analysis of Burn severity of Alcontar EP</title>

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<h1 class="title toc-ignore">Analysis of Burn severity of Alcontar EP</h1>

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<strong>Last updated:</strong> 2021-09-22
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<p>
<strong>Checks:</strong> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> 2 <span class="glyphicon glyphicon-exclamation-sign text-danger" aria-hidden="true"></span> 0
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<p>
<strong>Knit directory:</strong> <code>fire_alcontar/</code> <span class="glyphicon glyphicon-question-sign" aria-hidden="true" title="This is the local directory in which the code in this file was executed."> </span>
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This reproducible <a href="http://rmarkdown.rstudio.com">R Markdown</a> analysis was created with <a
  href="https://github.com/jdblischak/workflowr">workflowr</a> (version 1.6.2). The <em>Checks</em> tab describes the reproducibility checks that were applied when the results were created. The <em>Past versions</em> tab lists the development history.
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<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomajpelufirealcontartreeb725df5cf0ccde7e9d1b8092d7cdc27bc5dfa1a4targetblankb725df5a"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>Repository version:</strong> <a href="https://github.com/ajpelu/fire_alcontar/tree/b725df5cf0ccde7e9d1b8092d7cdc27bc5dfa1a4" target="_blank">b725df5</a> </a>
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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
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The results in this page were generated with repository version <a href="https://github.com/ajpelu/fire_alcontar/tree/b725df5cf0ccde7e9d1b8092d7cdc27bc5dfa1a4" target="_blank">b725df5</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
</p>
<pre><code>
Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Untracked files:
    Untracked:  data/nbr_autumn.csv
    Untracked:  data/sentinel_nbr/
    Untracked:  data/spatial/EP_Andalucía.cpg
    Untracked:  data/spatial/EP_Andalucía.dbf
    Untracked:  data/spatial/EP_Andalucía.prj
    Untracked:  data/spatial/EP_Andalucía.shp
    Untracked:  data/spatial/EP_Andalucía.shx
    Untracked:  data/spatial/GEO_PARCELAS.cpg
    Untracked:  data/spatial/GEO_PARCELAS.dbf
    Untracked:  data/spatial/GEO_PARCELAS.prj
    Untracked:  data/spatial/GEO_PARCELAS.qpj
    Untracked:  data/spatial/GEO_PARCELAS.shp
    Untracked:  data/spatial/GEO_PARCELAS.shx
    Untracked:  data/spatial/computed_nbr.tif
    Untracked:  data/spatial/computed_nbr.tif.aux.xml
    Untracked:  data/spatial/computed_rbr.tif

Unstaged changes:
    Modified:   analysis/fire_severity_drone.Rmd

</code></pre>
<p>
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
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These are the previous versions of the repository in which changes were made to the R Markdown (<code>analysis/index.Rmd</code>) and HTML (<code>docs/index.html</code>) files. If you’ve configured a remote Git repository (see <code>?wflow_git_remote</code>), click on the hyperlinks in the table below to view the files as they were in that past version.
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Rmd
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<td>
<a href="https://github.com/ajpelu/fire_alcontar/blob/b725df5cf0ccde7e9d1b8092d7cdc27bc5dfa1a4/analysis/index.Rmd" target="_blank">b725df5</a>
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<td>
ajpelu
</td>
<td>
2021-09-22
</td>
<td>
add sentinel analysis
</td>
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<td>
html
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<a href="https://rawcdn.githack.com/ajpelu/fire_alcontar/f656a44881f2e31acc3942610256a051bc4a27c1/docs/index.html" target="_blank">f656a44</a>
</td>
<td>
Antonio J Perez-Luque
</td>
<td>
2021-07-22
</td>
<td>
Build site.
</td>
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<td>
Rmd
</td>
<td>
<a href="https://github.com/ajpelu/fire_alcontar/blob/6920c407d4aac6390e9b69beceddc96f4bf80b48/analysis/index.Rmd" target="_blank">6920c40</a>
</td>
<td>
Antonio J Perez-Luque
</td>
<td>
2021-07-22
</td>
<td>
wflow_publish(c(“analysis/index.Rmd,” “analysis/fire_severity_drone.Rmd”))
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html
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Antonio J Perez-Luque
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<td>
2021-07-08
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Build site.
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Rmd
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<a href="https://github.com/ajpelu/fire_alcontar/blob/688361e525030e39e5c985afce06998d699b405a/analysis/index.Rmd" target="_blank">688361e</a>
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Antonio J Perez-Luque
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<td>
2021-07-08
</td>
<td>
add comparative
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html
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<a href="https://rawcdn.githack.com/ajpelu/fire_alcontar/9881d736aa08237639a9cc86cd7a3b130b07bdf5/docs/index.html" target="_blank">9881d73</a>
</td>
<td>
Antonio J Perez-Luque
</td>
<td>
2021-07-01
</td>
<td>
Build site.
</td>
</tr>
<tr>
<td>
Rmd
</td>
<td>
<a href="https://github.com/ajpelu/fire_alcontar/blob/a2df5c6b28f06c12f67811233fc2028a440416ae/analysis/index.Rmd" target="_blank">a2df5c6</a>
</td>
<td>
Antonio J Perez-Luque
</td>
<td>
2021-07-01
</td>
<td>
add exploratory analysis
</td>
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<td>
Rmd
</td>
<td>
<a href="https://github.com/ajpelu/fire_alcontar/blob/7a1b9e9a925feef58232359234ac867550a03141/analysis/index.Rmd" target="_blank">7a1b9e9</a>
</td>
<td>
Antonio J Perez-Luque
</td>
<td>
2021-06-30
</td>
<td>
Start workflowr project.
</td>
</tr>
</tbody>
</table>
</div>
<hr>
</div>
</div>
</div>
<p>Evaluación de los efectos combinados del fuego (quemas prescritas) y la ganadería sobre diferentes parámetros de vegetación y del suelo.</p>
<ul>
<li><a href="exploratory_analysis.html">Análisis preeliminares</a></li>
</ul>
<div id="comparativa-drone---campo" class="section level2">
<h2>Comparativa Drone - Campo</h2>
<ul>
<li><a href="drone_campo.html">Análisis preeliminar Cobertura Drone <em>vs</em> Campo</a></li>
</ul>
</div>
<div id="burn-severity" class="section level2">
<h2>Burn-severity</h2>
<ul>
<li><p><a href="fire_severity_drone.html">Classification of the parcelas according to fire severity</a> derived from UAV data of Severity’s map from <span class="citation">Carvajal-Ramírez <em>et al.</em> (2019)</span></p></li>
<li><p><a href="fire_severity_sentinel.html">Compute Normalized Burn Ratio from Sentinel</a> and extract information of the plots.</p></li>
</ul>
</div>
<div id="references" class="section level1 unnumbered">
<h1 class="unnumbered">References</h1>
<div id="refs" class="references csl-bib-body hanging-indent">
<div id="ref-CarvajalRamirezetal2019EvaluationFire" class="csl-entry">
Carvajal-Ramírez, F., Marques da Silva, J.R., Agüera-Vega, F., Martínez-Carricondo, P., Serrano, J. &amp; Moral, F.J. (2019). Evaluation of <span>Fire Severity Indices Based</span> on <span>Pre</span>- and <span>Post</span>-<span>Fire Multispectral Imagery Sensed</span> from <span>UAV</span>. <em>Remote Sensing</em>, 11, 993.
</div>
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