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@Gaius-Augustus

Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 393 86

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 296 113

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 140 5

  4. Tiberius Tiberius Public

    Tiberius is a deep learning gene finder.

    Python 52 5

  5. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 47 5

  6. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 34 4

Repositories

Showing 10 of 20 repositories
  • learnMSA Public

    Learning and Aligning Large Protein Families with support of protein language models.

    Jupyter Notebook 21 MIT 4 5 0 Updated Mar 28, 2025
  • Tiberius Public

    Tiberius is a deep learning gene finder.

    Python 52 MIT 5 16 0 Updated Mar 25, 2025
  • Diatom_annotation_scripts Public

    Helper scripts to prepare a functionally decorated BRAKER output file for upload to NCBI Genomes

    Python 0 MIT 0 0 0 Updated Feb 28, 2025
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Perl 140 5 10 1 Updated Jan 27, 2025
  • BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 393 86 173 (3 issues need help) 2 Updated Jan 22, 2025
  • Augustus Public

    Genome annotation with AUGUSTUS

    C++ 296 113 161 6 Updated Jan 6, 2025
  • webaugustus Public
    Groovy 0 0 0 0 Updated Dec 8, 2024
  • clamsa Public Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Python 11 2 4 (1 issue needs help) 0 Updated Nov 21, 2024
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 47 7 12 0 Updated Nov 13, 2024
  • MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 34 GPL-3.0 4 1 0 Updated Oct 2, 2024

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