A flexible toolkit for simulation based inference in Julia

Documentation and tutorials for the Turing language

Implementation of variational Bayes inference algorithms

Bayesian inference with probabilistic programming.

Real-time brain states tracking system and corticothalamic neural field parameter estimation

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

The Julia Programming Language

Physics-Informed Neural Networks (PINN) Solvers of (Partial) Differential Equations for Scientific Machine Learning (SciML) accelerated simulation

Pre-built implicit layer architectures with O(1) backprop, GPUs, and stiff+non-stiff DE solvers, demonstrating scientific machine learning (SciML) and physics-informed machine learning methods

Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equat…

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning a…

Tutorial for fitting group DCMs on M/EEG data

Julia package for simulating Dynamics on Networks

An approach for embedding hierarhical structures into a continuous vector space using variational autoencoders.

Working files for modelling interneuron - motoneuron interactions during an isometric leg task

Test code for generating containers using Singularity and Matlab compiler.

SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.

The intrusive "Ad blocker are not allowed on YouTube" message is annoying. This open-source project aims to address this issue by providing a solution to bypass YouTube's ad blocker detection

Tutorial for using Singularity containers

Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population …

equation discovery based on generative models

This toolbox allows to simulate interactions between neural mass potentials (resonating at 40Hz) in the structural connectome. Here, a single brain region is seen as an oscillator whose dynamics is…