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@ccdmb

CCDM Bioinformatics

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  1. BioDendro Public

    A package to cluster and visualise MS/MS spectral data

    Jupyter Notebook 11 1

  2. catastrophy Public

    CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

    Python 6

  3. predector Public

    Effector prediction pipeline based on protein properties.

    Shell 14 8

Repositories

Showing 10 of 25 repositories
  • postasm Public Forked from darcyabjones/postasm

    QC and tidying on assembled genomes.

    Groovy 0 Apache-2.0 1 0 0 Updated Nov 15, 2024
  • pante Public Forked from darcyabjones/pante

    A pipeline for predicting and masking transposable elements in multiple genomes.

    Groovy 0 Apache-2.0 10 0 0 Updated Nov 15, 2024
  • qcflow Public Forked from darcyabjones/qcflow

    Perform basic QC on illumina data

    Groovy 0 MIT 1 0 0 Updated Nov 15, 2024
  • mitoflow Public Forked from darcyabjones/mitoflow

    A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.

    Groovy 0 MIT 1 0 0 Updated Nov 15, 2024
  • predector Public

    Effector prediction pipeline based on protein properties.

    Shell 14 Apache-2.0 8 14 (1 issue needs help) 0 Updated Aug 30, 2024
  • predector-utils Public

    Utilities for running the predector pipeline.

    Python 0 Apache-2.0 0 2 0 Updated Aug 30, 2024
  • LR-toolkit Public

    🌱 Toolkit for long reads RNAseq data analysis

    Nextflow 1 0 3 0 Updated Jan 17, 2024
  • ccdmb.github.io Public

    Front page for the CCDM bioinformatics group.

    0 Apache-2.0 0 0 0 Updated Nov 13, 2023
  • nanopore_assembly Public
    Nextflow 0 0 0 0 Updated May 10, 2023
  • barley-DH-pow-rnaseq Public

    RNA-seq analysis of barley double haploid (DH) lines from Baudin / Eth069 cross during powdery mildew disease

    0 MIT 0 0 0 Updated May 2, 2023
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