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@cmmr

Alkek Center for Metagenomics and Microbiome Research

CMMR researchers develop molecular and informatic tools to advance clinical microbiome research.

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  1. EsViritu Public

    Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

    Shell 24 3

  2. Marker-MAGu Public

    Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes

    Python 19 1

  3. virmap Public

    Perl 26 14

Repositories

Showing 10 of 12 repositories
  • semaphore Public

    Shared Memory Atomic Operations in R

    R 2 0 0 0 Updated Mar 28, 2025
  • rbiom Public

    Interact with Biological Observation Matrix files.

    R 16 0 4 0 Updated Mar 18, 2025
  • webqueue Public

    HTTP Server Using Multiple CPU Cores

    R 2 0 1 0 Updated Mar 11, 2025
  • jobqueue Public

    Queue and Run Asynchronous Interruptible R Tasks on Background Processes

    R 2 0 0 0 Updated Mar 3, 2025
  • fillpattern Public

    Patterned Fills for 'ggplot2' and 'grid' Graphics

    R 8 0 0 0 Updated Jun 24, 2024
  • TX_wastewater_virome Public
    HTML 5 0 1 0 Updated Mar 7, 2024
  • EsViritu Public

    Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

    Shell 24 MIT 3 7 0 Updated Nov 27, 2023
  • Marker-MAGu Public

    Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes

    Python 19 MIT 1 4 0 Updated Oct 17, 2023
  • virmap Public
    Perl 26 AGPL-3.0 14 17 0 Updated Feb 2, 2021
  • covid Public archive

    COVID-19 Dashboard coded in Shiny R

    R 0 AGPL-3.0 1 0 0 Updated Jun 26, 2020
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