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Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 82 57

  2. lsd lsd Public

    🌈

    Python 54 35

  3. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 30 18

  4. motile motile Public

    Multi-Object Tracker using Integer Linear Equations

    Python 30 5

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 23 2

  6. linajea linajea Public

    Python 18 7

Repositories

Showing 10 of 76 repositories
  • spatial_graph Public

    A spatial graph datastructure for python

    C++ 3 MIT 1 4 4 Updated Apr 13, 2025
  • witty Public

    A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.

    Python 3 MIT 1 0 1 Updated Apr 13, 2025
  • tree_view_sandbox Public

    A sandbox repo for developing a VisPy lineage tree viewer

    Python 0 1 0 1 Updated Apr 11, 2025
  • quac Public

    Quantitative Attributions with Counterfactuals

    Python 2 MIT 0 16 1 Updated Apr 11, 2025
  • geff Public

    Reference implementation of the Graph Exchange File Format

    Python 0 MIT 0 9 1 Updated Apr 11, 2025
  • finn Public

    finn is (not) napari

    Python 3 BSD-3-Clause 1 23 2 Updated Apr 11, 2025
  • drosophila_neurotransmitters Public

    Neurotransmitter ground truth

    TeX 1 0 3 0 Updated Apr 9, 2025
  • funlib.persistence Public

    Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

    Python 4 MIT 11 6 1 Updated Apr 9, 2025
  • gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 82 MIT 57 12 2 Updated Apr 9, 2025
  • motile_tracker Public

    An application for interactive for tracking with motile

    Python 7 BSD-3-Clause 5 47 1 Updated Apr 7, 2025
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