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Issues: nf-core/modules

Migrate all modules to nf-test (batch 1)
#7529 opened Feb 28, 2025 by LouisLeNezet
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Migrate all subworkflows to nf-test
#7575 opened Feb 28, 2025 by LouisLeNezet
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479 Open 1,623 Closed
479 Open 1,623 Closed
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Issues list

Conda package name clash between conda-forge and bioconda for the fq package. bug Something isn't working
#7871 opened Mar 20, 2025 by delagoya
2 tasks done
1
1
Dealing with asynchronous metadata enhancement New feature or request question Further information is requested
#7865 opened Mar 20, 2025 by Dishalodha
Enable onError in BUSCO enhancement New feature or request
#7864 opened Mar 20, 2025 by Dishalodha
Update the nextflow config for BUSCO with error stratergy enhancement New feature or request
#7863 opened Mar 20, 2025 by Dishalodha
3 of 4 tasks
1
Migrate PROCESS_SEQ_REGION to nextflow_modules new module Adding a new module
#7860 opened Mar 19, 2025 by Dishalodha
3 of 4 tasks
Migrate PROCESS_FASTA module to nextflow_module new module Adding a new module
#7859 opened Mar 19, 2025 by Dishalodha
3 of 4 tasks
MigrateMANIFEST_STATS to nextflow_modules new module Adding a new module
#7858 opened Mar 19, 2025 by Dishalodha
3 of 4 tasks
Migrate MANIFEST module to nextflow_modules new module Adding a new module
#7857 opened Mar 19, 2025 by Dishalodha
3 of 4 tasks
Migrate the AMEND_GENOME_DATA module to nextflow_module new module Adding a new module
#7856 opened Mar 19, 2025 by Dishalodha
4 tasks done
Add CI/CD for nextflow_modules
#7855 opened Mar 19, 2025 by Dishalodha
new module: metabuli/classify new module Adding a new module
#7853 opened Mar 19, 2025 by sofstam
3 of 4 tasks
new module: metacache/query new module Adding a new module
#7852 opened Mar 19, 2025 by sofstam
3 of 4 tasks
Create nf-test for prepare_metadata subworkflow new module Adding a new module
#7851 opened Mar 19, 2025 by Dishalodha
3 of 4 tasks
new module: genome_metadata /prepare_genome_metadata.nf new module Adding a new module
#7850 opened Mar 19, 2025 by Dishalodha
3 of 4 tasks
1
new subworkflow: Prepare metadata as a subworkflow new subworkflow
#7849 opened Mar 19, 2025 by Dishalodha
4 tasks done
1
new module: SegmentationBenchmark new module Adding a new module
#7848 opened Mar 19, 2025 by BioinfoTongLI
4 tasks done
1
Add nf-test to utils subworkflowin nextflow_modules update module
#7842 opened Mar 18, 2025 by Dishalodha
4 tasks done
3
utils subworkflow: nextflow_modules new subworkflow
#7819 opened Mar 17, 2025 by Dishalodha
4 tasks done
1
new module: TOOL/SUBTOOL plink-PCA new module Adding a new module
#7799 opened Mar 14, 2025 by bruno-ariano
4 tasks done
@bruno-ariano
new module: gwas2vcf/convert new module Adding a new module
#7798 opened Mar 14, 2025 by edg1983
4 tasks done
@edg1983
new subworkflow: MHC_BINDING_PREDICTION new subworkflow
#7797 opened Mar 14, 2025 by jonasscheid
4 tasks done
@jonasscheid
1
Inputs copied to work directory from scratch directory in GATK4SPARK_APPLYBQSR bug Something isn't working
#7792 opened Mar 13, 2025 by johnoooh
2 tasks done
@johnoooh
new module: BEDTOOLS/RANDOM new module Adding a new module
#7786 opened Mar 12, 2025 by itrujnara
4 tasks done
@itrujnara
Linting fails for module with Dockerfile bug Something isn't working
#7781 opened Mar 12, 2025 by fasterius
2 tasks done
1
new module: MATLOCK/BAM2JUICER new module Adding a new module
#7778 opened Mar 11, 2025 by GallVp
4 tasks done
@GallVp
ProTip! no:milestone will show everything without a milestone.