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@physiopy

The physiopy community

A set of tools to operate physiological files in MRI setups
README.md

Welcome to the GitHub organisation page for the Physiopy community!

Please check out our Website for more information about who we are, current software libraries and accompanying documentation, and much more about the importance of physiological data.

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  1. physiopy Public

    Metapackage for physiopy repository

    Python 1 5

  2. phys2bids Public

    Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

    Python 65 45

  3. phys2denoise Public

    A toolbox and collection of scripts to prepare physiology data for fMRI denoise

    Python 8 19

  4. physioqc Public

    Toolbox for physiological data (Automagic) Quality Control

    Python 2 8

  5. prep4phys Public

    A toolbox for physiological peak detection analyses. Formerly peakdet.

    Python 1 2

  6. peakdet Public

    Toolbox for physiological peak detection analyses. Soon to be deprecated in favour of prep4phys

    Python 26 20

Repositories

Showing 10 of 19 repositories
  • phys2bids Public

    Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

    Python 65 Apache-2.0 45 50 (3 issues need help) 8 Updated Mar 3, 2025
  • physioqc Public

    Toolbox for physiological data (Automagic) Quality Control

    Python 2 Apache-2.0 8 11 (1 issue needs help) 3 Updated Mar 3, 2025
  • phys2denoise Public

    A toolbox and collection of scripts to prepare physiology data for fMRI denoise

    Python 8 Apache-2.0 19 22 (2 issues need help) 6 Updated Mar 3, 2025
  • peakdet Public

    Toolbox for physiological peak detection analyses. Soon to be deprecated in favour of prep4phys

    Python 26 Apache-2.0 20 3 (3 issues need help) 4 Updated Mar 3, 2025
  • physiopy.github.io Public

    Main website for Physiopy documentation.

    1 CC-BY-4.0 13 13 5 Updated Feb 19, 2025
  • physiopy-automations Public

    test & document automations used across physiopy repos

    0 0 2 0 Updated Feb 19, 2025
  • physiopy-governance Public

    Governance of physiopy

    0 CC-BY-4.0 1 0 0 Updated Jan 13, 2025
  • physutils Public

    Common tools for the physiopy suite

    Python 0 Apache-2.0 4 3 2 Updated Oct 25, 2024
  • physiopy-community-guidelines Public

    Repository for Physiopy's community guidelines

    Python 1 CC-BY-SA-4.0 3 2 0 Updated Sep 16, 2024
  • prep4phys Public

    A toolbox for physiological peak detection analyses. Formerly peakdet.

    Python 1 Apache-2.0 2 24 1 Updated Jul 25, 2024
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