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@stjudecab

St. Jude Center for Applied Bioinformatics (CAB)

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  1. stjudecab.github.io stjudecab.github.io Public

    Forked from sanderslab/sanderslab.github.io

    Official website for St. Jude CAB

    JavaScript 4 7

  2. CoCoRV_nextflow_singularity CoCoRV_nextflow_singularity Public

    Implementation of CoCoRV pipeline using Nextflow and Singularity

    Perl 2

  3. containers containers Public

    Bioinformatics containers used in St. Jude CAB

    Perl 2

  4. CoCoRV_nextflow_conda CoCoRV_nextflow_conda Public

    Implementation of CoCoRV pipeline using Nextflow and Micromamba

    Nextflow 1

  5. tools tools Public

    Forked from nf-core/tools

    Python package with helper tools for the nf-core community.

    Python

  6. configs configs Public

    Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    Nextflow

Repositories

Showing 10 of 10 repositories
  • containers Public

    Bioinformatics containers used in St. Jude CAB

    Perl 2 Apache-2.0 0 0 0 Updated Mar 28, 2025
  • test_datasets Public

    Test data used in github actions for stjudecab's bioinformatics pipelines

    0 MIT 0 0 0 Updated Mar 27, 2025
  • stjudecab.github.io Public Forked from sanderslab/sanderslab.github.io

    Official website for St. Jude CAB

    JavaScript 4 76 0 0 Updated Feb 24, 2025
  • fusion-report Public Forked from Clinical-Genomics/fusion-report

    Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/

    Python 0 GPL-3.0 11 0 0 Updated Feb 10, 2025
  • configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    Nextflow 0 MIT 299 0 0 Updated Jan 23, 2025
  • CoCoRV_nextflow_singularity Public

    Implementation of CoCoRV pipeline using Nextflow and Singularity

    Perl 2 MIT 0 0 0 Updated Dec 6, 2024
  • modules Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow 0 MIT 836 0 0 Updated Sep 26, 2024
  • st-workshop Public
    0 MIT 0 0 0 Updated Sep 17, 2024
  • tools Public Forked from nf-core/tools

    Python package with helper tools for the nf-core community.

    Python 0 MIT 201 0 0 Updated Jul 25, 2024
  • CoCoRV_nextflow_conda Public

    Implementation of CoCoRV pipeline using Nextflow and Micromamba

    Nextflow 1 MIT 0 0 0 Updated Mar 26, 2024

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