Homepage for my research group as an example of LYX Jekyll Theme.

pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an up-to-date API documention please check our website:

Computational statistical mechanics of field-responsive polymer chains

Python code to model spinodal decomposition using the Cahn-Hilliard equation.

Single polymer chain simulation; linear or circular configuration, optional and adjustable excluded volume force.

Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

Quantum field theory analysis in curved spacetime geometries. Studies vacuum fluctuations, energy conditions, and field behavior in exotic spacetime configurations for theoretical physics research.

Fit sticky-reptation model to experimental linear viscoelasticity data

Python package for quantum gravity calculations using Loop Quantum Gravity. Features adaptive mesh refinement, 3+1D polymer fields, constraint closure testing, and GPU-accelerated phenomenology generation for quantum spacetime research.

Integration of Loop Quantum Gravity with quantum field theory. Studies matter-geometry coupling, polymer field interactions, and quantum gravitational effects on field dynamics.

Code to model active loop extrusion on chromatin using hybrid MD-MC.

Polymer-enhanced fusion simulation framework studying LQG physics integration with tokamak systems. Includes HTS materials modeling, coil optimization, liquid metal divertors, and economic analysis for fusion energy research.

Code used for publication in Physical Review E: "Polymer dynamics under tension: mean first passage time for looping", by Wout Laeremans, Anne Floor den Ouden, Jef Hooyberghs and Wouter G. Ellenbroek.

Use PyConforMap to generate a simple scatter plot to map conformational landscapes of intrinsically disordered proteins, and quantify conformational diversity.

a tool for the analysis of multiplexed FISH (Fluorescence In Situ Hybridization) data