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@GoekeLab

Göke Lab

Computational Transcriptomics - Third Generation Sequencing

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  1. sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    R 125 25

  2. bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    R 202 24

  3. xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    Python 147 23

  4. m6anet Public

    Detection of m6A from direct RNA-Seq data

    Python 119 18

  5. bioinformatics-workflows Public

    minimal example implementations for bioinformatics workflow managers

    Python 271 47

  6. awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    261 47

Repositories

Showing 10 of 16 repositories
  • bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    R 202 GPL-3.0 24 40 2 Updated Mar 17, 2025
  • m6anet Public

    Detection of m6A from direct RNA-Seq data

    Python 119 MIT 18 17 0 Updated Mar 13, 2025
  • bambu-singlecell-spatial Public

    Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

    Nextflow 9 GPL-3.0 1 5 0 Updated Feb 6, 2025
  • sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    R 125 25 9 0 Updated Jan 15, 2025
  • xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    Python 147 MIT 23 31 1 Updated Nov 7, 2024
  • awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    261 MIT 47 1 1 Updated Aug 6, 2024
  • NanoporeRNASeq Public

    Nanopore RNASeq data

    R 8 MIT 1 0 0 Updated Oct 25, 2022
  • proActiv Public

    Estimation of Promoter Activity from RNA-Seq data

    R 51 15 12 0 Updated Jan 24, 2022
  • nanoseq Public Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline

    Nextflow 4 MIT 84 0 0 Updated Dec 17, 2021
  • containers Public Forked from BioContainers/containers

    Bioinformatics containers

    Dockerfile 3 Apache-2.0 253 0 0 Updated Nov 3, 2021

Most used topics

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