Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Scientific Inkscape: Inkscape extensions for figure resizing and editing

🆙 Upscayl - #1 Free and Open Source AI Image Upscaler for Linux, MacOS and Windows.

Manipulation and analysis of geometric objects on the sphere.

The GitButler version control client, backed by Git, powered by Tauri/Rust/Svelte

Intuitive, easy CLIs based on python type hints.

RFHunter is a device to find hidden Cameras at AirBNBs

CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets

《明日方舟》小助手，全日常一键长草！| A one-click tool for the daily tasks of Arknights, supporting all clients.

Pipeline for testing drug response prediction models in a statistically and biologically sound way.

Methods for detecting doublets in single-cell sequencing data

MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses

A Python toolkit for subcellular analysis of spatial transcriptomics data

QuPath extension for Segment Anything Model (SAM)

Styling matplotlib made easy

Clean APIs for data cleaning. Python implementation of R package Janitor

An open and interoperable data framework for spatial omics data

distributed, likelihood-free inference

A Python module for decorators, wrappers and monkey patching.

Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

Extracting spatial and temporal world models from LLMs

A terminal application to view, tail, merge, and search log files (plus JSONL).

TorchCFM: a Conditional Flow Matching library

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

The mouse and trackpad utility for Mac.