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@Rostlab

Rostlab

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  1. predictprotein-docker Public

    Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, in…

    Dockerfile 13 7

  2. bio_embeddings Public

    Repository containing bio_embeddings resources

  3. EAT Public

    Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to …

    Python 32 6

  4. VESPA Public

    VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

    Python 31 7

  5. TMbed Public

    Transmembrane proteins predicted through Language Model embeddings

  6. ProtTrans Public

    Forked from agemagician/ProtTrans

    ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

    Jupyter Notebook 10 1

Repositories

Showing 10 of 55 repositories
  • EAT Public

    Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to query protein embedding.

    Python 32 GPL-3.0 6 1 0 Updated Jan 21, 2025
  • bindPredict Public

    Prediction of binding residues for metal ions, nucleic acids, and small molecules.

    Python 32 MIT 9 2 0 Updated Dec 16, 2024
  • goPredSim Public
    Python 44 MIT 4 0 0 Updated Dec 2, 2024
  • TMvisDB Public archive

    TMvisDB provides per-residue transmembrane topology annotations for all proteins in AlphaFold DB (~ 200 million proteins, September '22) predicted as transmembrane proteins (~ 46 million).

    Jupyter Notebook 0 AFL-3.0 0 0 0 Updated Nov 13, 2024
  • mlschool Public

    Website for the Machine Learning Summerschool for Toxinologists

    JavaScript 0 MIT 0 0 0 Updated Nov 6, 2024
  • RostSpace Public archive
    Python 2 AGPL-3.0 0 2 0 Updated Oct 17, 2024
  • VESPA Public

    VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

    Python 31 AGPL-3.0 7 1 0 Updated Mar 4, 2024
  • smiles-cl Public
    Python 1 Apache-2.0 0 0 0 Updated Aug 15, 2023
  • blog Public
    TypeScript 0 MIT 0 0 0 Updated Aug 3, 2023
  • LambdaPP Public
    JavaScript 4 AFL-3.0 0 0 0 Updated May 12, 2023
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