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Uauy-Lab

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  1. pangenome-haplotypes pangenome-haplotypes Public

    Scripts to do haplotype analysis on pan genomes.

    HTML 21 2

  2. expvip-web expvip-web Public

    expVIP. EXPression and VIsualisation Platform

    Ruby 17 10

  3. WheatHomoeologExpression WheatHomoeologExpression Public

    Jupyter Notebook 15 9

  4. IBSpy IBSpy Public

    Python library to identify Identical By State regions

    C++ 15 4

  5. bioruby-polyploid-tools bioruby-polyploid-tools Public

    Library and tools to deal with polyploid genomics

    Ruby 10 11

  6. bioruby-pangenome bioruby-pangenome Public

    Scripts for the pan genome analysis

    Ruby 8

Repositories

Showing 10 of 21 repositories
  • transcript_to_genomic_loci Public Forked from sophiejcarpenter/transcript_to_genomic_loci

    Translating transcript-relative loci to genome-relative loci

    R 0 1 0 0 Updated Nov 22, 2024
  • tef_kGWAS_2024 Public Forked from maxrwjones/tef_kGWAS_2024

    Custom bash and R code used for a project applying k-mer-based GWAS to a range of agronomic and grain metabolite traits in tef (Eragrostis tef)

    R 0 MIT 1 0 0 Updated Sep 4, 2024
  • Uauy_Lab_RNAseq_mapping_pipeline Public Forked from maxrwjones/Uauy_Lab_RNAseq_mapping_pipeline

    A small pipeline for generating transcriptomic data from raw FASTQ files via Fastp trimming and Kallisto pseudoalignment.

    Shell 0 MIT 1 0 0 Updated Nov 22, 2023
  • MLP_finding Public
    Python 0 0 0 0 Updated Sep 23, 2023
  • IBSpy Public

    Python library to identify Identical By State regions

    C++ 15 MIT 4 4 0 Updated Mar 19, 2023
  • expvip-web Public

    expVIP. EXPression and VIsualisation Platform

    Ruby 17 MIT 10 14 6 Updated Mar 8, 2023
  • pangenome-web Public

    Web visualisation of regions identical by descent.

    Ruby 6 0 5 24 Updated Jan 19, 2023
  • pyensemblorthologues Public
    Python 0 MIT 0 0 0 Updated Oct 11, 2022
  • monococcum_introgressions Public Forked from quirozcj/monococcum_introgressions

    Analysis of monococcum introgressions into hexaploid wheat

    Jupyter Notebook 2 3 0 0 Updated Sep 19, 2022
  • ML-carpel_traits Public

    This repository contains the training codes for the development of the model used to quantify stigma area and ovary diameter. The trained models are also included. R scripts used for data organisation and visualisation are provided.

    Python 1 1 0 0 Updated Jul 4, 2022
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