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@abcwcm

Applied Bioinformatics Core @ Weill Cornell Medicine

Turning sequencing reads into biomedically-relevant answers. Scripts written by Paul Zumbo, Friederike Dündar and Maider Astorkia Amiama.

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  1. Chandran2021 Public

    Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)

    HTML 1

  2. GeartySchietinger Public

    Scripts related to bulkRNA-seq as well as single-cell CITE-seq and VDJ-seq data of Gearty et al. (2021)

    HTML 5 4

  3. Notaras_MolPsy Public

    Code for the analysis of brain-organoid-derived single-cell RNA-seq data as published in Notaras et al., 2021

    HTML 2

  4. Shakiba2020 Public

    Code for the analyses of bulk RNA-seq and ATAC-seq presented in Shakiba et al., J Exp Med (2021)

    Makefile 1

  5. Scott2019 Public

    Code and data for the bulk RNA-seq and bulk ATAC-seq data of tumor-infiltrating CD8 T cells (and controls) as published in Scott et al., Nature (2019).

    Makefile

Repositories

Showing 10 of 28 repositories
  • Nagiec2025 Public

    Scripts for re-creating figures and analyses related to Nagiec et al.

    R 0 MIT 0 0 0 Updated Mar 14, 2025
  • Jupyter Notebook 0 0 0 0 Updated Mar 6, 2025
  • CZI_MI_mouseZebrafish Public

    Scripts for the analysis of scRNA-seq data of mouse and zebrafish

    HTML 0 MIT 0 3 0 Updated Nov 6, 2024
  • Guo2024 Public
    Makefile 0 0 0 0 Updated Oct 22, 2024
  • Shell 0 0 0 0 Updated Sep 4, 2024
  • redin_smarca4 Public
    0 0 0 0 Updated Jul 1, 2024
  • Makefile 1 0 0 0 Updated Apr 30, 2024
  • Rudloff2022 Public
    HTML 3 0 0 0 Updated Apr 25, 2023
  • HTML 0 MIT 0 0 0 Updated Mar 5, 2023
  • RubioNavarro_Pancreas Public

    Scripts related to single-cell and bulk RNA-seq data of mouse pancreata as presented by Rubio-Navarro et al.

    HTML 1 MIT 0 0 0 Updated Jan 14, 2023

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