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  1. computational-cell-analytics/micro-sam Public

    Segment Anything for Microscopy

    Jupyter Notebook 595 82

  2. torch-em Public

    Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

    Jupyter Notebook 107 26

  3. elf Public

    Utils and convenience functions for large-scale bio-image analysis.

    Python 58 20

  4. z5 Public

    Lightweight C++ and Python interface for datasets in zarr and N5 format

    C++ 127 30

  5. cluster_tools Public

    Distributed segmentation for bio-image-analysis

    Python 39 14

  6. DerThorsten/nifty Public

    A nifty library for graph based image segmentation.

    C++ 46 22