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  1. Image_toolbox Public

    This is my toolbox for image processing and downstream analysis of calcium imaging data.

    Jupyter Notebook 5 3

  2. Fishlines Public

    This is a toy program to operate the database of zebrafish lines that I am maintaining.

    C++ 1

  3. FIJI_tools Public

    A collection of handy FIJI macros for image processing.

    Python

  4. CalAnalyzer Public

    The downstream analysis toolbox of processed calcium imaging data. Former 'analysis' and 'visualization' folders in the repository 'Image_toolbox'. A GUI module is included.

    Python

  5. Filter_wheel Public

    A filter wheel controller system based on Arduino and Parallax servos.

    Python

  6. Phase_Retrieval Public

    An implementation of the phase-retrieval algorithm for pupil function calculation.

    Python