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@epinowcast

Epinowcast

A community project building tools for real-time modelling of infectious disease

We are a community of infectious disease modellers, applied epidemiologists, software developers, and others building a suite of tools for real-time analysis of infectious diseases. On top of developing these tools, we also do research on when they work and when they don't, write case studies to showcase best practices, support users and decision-makers, and compare our work to that of others. Visit epinowcast.org for more.

Popular repositories Loading

  1. epinowcast epinowcast Public

    Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.

    R 61 21

  2. epidist epidist Public

    Estimate epidemiological delay distributions with brms

    R 15 7

  3. primarycensored primarycensored Public

    Primary event censored distributions.

    R 8 4

  4. baselinenowcast baselinenowcast Public

    In-development R package to nowcast right-truncated epidemiological data

    R 6

  5. coerceDT coerceDT Public

    Ingest-and-check user-provided input to standardized `data.table`s

    R 3

  6. actions actions Public

    GitHub Actions for the epinowcast community

    JavaScript 3 1

Repositories

Showing 10 of 13 repositories
  • baselinenowcast Public

    In-development R package to nowcast right-truncated epidemiological data

    R 6 0 15 3 Updated Apr 1, 2025
  • epinowcast Public

    Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.

    R 61 21 103 (55 issues need help) 8 Updated Apr 1, 2025
  • baselinenowcast-paper Public

    Work in progress repository for the evaluation paper associated with the `baselinenowcast` R package

    R 1 0 1 0 Updated Mar 31, 2025
  • primarycensored-writeup Public

    A repository for writing up the primarycensored

    TeX 3 MIT 0 0 0 Updated Mar 17, 2025
  • epidist Public

    Estimate epidemiological delay distributions with brms

    R 15 7 28 1 Updated Mar 14, 2025
  • epinowcast.github.io Public

    Organisation website

    R 0 1 1 0 Updated Mar 12, 2025
  • primarycensored Public

    Primary event censored distributions.

    R 8 4 23 (3 issues need help) 1 Updated Mar 4, 2025
  • actions Public

    GitHub Actions for the epinowcast community

    JavaScript 3 MIT 1 2 3 Updated Feb 18, 2025
  • coerceDT Public

    Ingest-and-check user-provided input to standardized `data.table`s

    R 3 0 5 1 Updated Jan 6, 2025
  • epinowcast.r-universe.dev Public

    Epinowcast R Universe

    0 0 0 0 Updated Oct 9, 2024

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