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@glasgowcompbio

glasgowcompbio

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  1. vimms Public

    A programmable and modular LC/MS simulator in Python

    Python 21 7

  2. ms2ldaviz Public

    Substructural discovery in untargeted metabolomics data using LDA topic modelling.

    Jupyter Notebook 11 8

  3. GraphOmics Public

    Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.

    Jupyter Notebook 12 2

  4. PALS Public

    Ranking metabolite (and other omics sets) by their activity levels via SVD

    Jupyter Notebook 2 1

Repositories

Showing 10 of 16 repositories
  • vimms Public

    A programmable and modular LC/MS simulator in Python

    Python 21 MIT 7 11 1 Updated Feb 17, 2025
  • GraphOmics Public

    Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.

    Jupyter Notebook 12 MIT 2 25 9 Updated May 30, 2024
  • pySubstructures Public

    A Python package to perform unsupervised discoveries of motifs from tandem mass spectrometry data.

    Jupyter Notebook 1 MIT 0 2 0 Updated Mar 26, 2024
  • ms2ldaviz Public

    Substructural discovery in untargeted metabolomics data using LDA topic modelling.

    Jupyter Notebook 11 MIT 8 25 9 Updated Nov 10, 2023
  • pyBasket Public

    Incorporating omics clustering for Bayesian basket trial design

    Jupyter Notebook 1 MIT 0 1 0 Updated Aug 9, 2023
  • vimms-gym Public

    A Gym environment to learn mass spectrometry data acquisition using reinforcement learning

    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 14, 2023
  • pyMultiOmics Public

    Python toolbox for multi-omics data mapping and analysis

    Jupyter Notebook 23 MIT 5 11 (2 issues need help) 0 Updated Apr 13, 2023
  • pyBatman Public

    A pipeline to infer metabolite concentrations from 1D NMR data using BATMAN (Bayesian AuTomated Metabolite Analyser for NMR)

    Jupyter Notebook 1 GPL-3.0 2 1 0 Updated Jan 26, 2023
  • PALS Public

    Ranking metabolite (and other omics sets) by their activity levels via SVD

    Jupyter Notebook 2 MIT 1 18 1 Updated Aug 6, 2022
  • pyMultiOmics-data Public

    Test data for pyMultiOmics notebooks

    0 0 0 0 Updated Mar 24, 2022
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